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G8 science ministers’ recommendations on access to research

As preparations were underway in Northern Ireland for the 39th G8 summit, science ministers from G8 nations met with their national science academies to discuss the most pressing issues in research facing scientists worldwide. Their recommendations will be put to the G8 leaders during talks being held June 17-18. Among them are decisive actions required to make scientific research more open and more accessible.

In a statement released on June 13, the group noted that open enquiry is at the heart of scientific endeavour, and rapid technological change has profound implications for the way that science is both conducted and its results communicated. Further they announced their support for a clear set of principles for more open data, including that publicly funded research data should be made open, and that open data by definition should be easily discoverable, accessible and assessable.

Crucially, this set of principles acknowledges the need for open data to be written into government policy to ensure universal adoption, and for that policy to take into account the need for rewards and recognition for researchers opening up their data, and a digital infrastructure to support this data sharing. International collaboration will be essential to make this a global reality.

The G8 science ministers also made clear the importance of access to scientific research. This comes in the wake of steps taken in UK government policy (Universities Minister David Willets has mandated that all publicly funded research be published in gold or green open access venues) and wider lobbying from key figures in the research community. In the statement for G8 leaders, science ministers have outlined their main goals in relation to accessible research, highlighting the importance of peer review and the role of publishers and learned societies. The statement also reiterates the findings of the UK’s Finch Report of last year, namely that making publicly funded, peer-reviewed, published scientific research increasingly accessible will ‘accelerate research, drive innovation, and benefit the economy.’

To accommodate for the greater demand for data sharing alongside article publication open access publisher BioMed Central has developed a number of innovative journals and partnerships. From GigaScience, the big data genomics journal published in collaboration with the BGI, to an agreement with LabArchives that allows BioMed Central authors up to 100 MB of free storage in an online ‘notebook’ for research associated data. A number of its journals, including BMC Research Notes also provide a novel article type – a data note – that allows authors to submit data sets (either as associated files or via a link to an accessible deposition in a data repository) with a short accompanying report, separate to a full results article.

One area in particular that is receiving increasing attention and loud calls for greater openness is clinical trial research. The AllTrials initiative was founded early in 2013, and, although UK based, has international scope and ambitions. The campaign calls on governments to demand that all clinical trial research be published, and clinical trial data made publicly available within the constraints of ensuring anonymity of sensitive medical information. The campaign is supported by a number of publishers, societies and institutions, including the BMJ (co-founders of the initiative), BioMed Central, the Wellcome Trust, and GalxoSmith Kline. The campaign also has support from the European Patients Forum, which comprises 61 member bodies and over 150 million members, signalling the strengthening call from the public for transparency and accountability in the reporting of scientific research, especially that funded by public money.

The statement from the G8 science ministers is a step toward recognising this shift in public opinion and research demands. The outcomes of the G8 summit this week could kick start an international movement in opening up research and sharing data.

DOAJ announces new selection criteria

The Directory of Open Access Journals is delighted to announce new selection criteria and hereby announces that these new criteria are open for public comment until July 15th.

The DOAJ-team has developed the criteria and our Advisory Board has provided valuable input and comments.

With the growth in the number of research funders, institutional open access policies and mandates, all stakeholders involved – researchers (as authors and readers), research managers, staff managing publication funds, librarians, universities and research funders – need a trusted and reliable information resource that identifies good quality open access journals and filters out disreputable publishers. Equally, the former have a vested interest in not being associated with the latter.

We have tried to construct objective criteria that can facilitate compliance verification easily. In order to be listed in the DOAJ, a journal must meet the following criteria:

  • Journal will be asked to provide basic information (title, ISSN, etc.), contact information, and information about journal policies
  • Journal is registered with SHERPA/RoMEO
  • Journal has an editorial board with clearly identifiable members (including affiliation information)
  • Journal publishes a minimum of five articles per year (does not apply for new journals)
  • Allows use and reuse at leastat the following levels (as specified in the Open Access Spectrum, http://www.plos.org/about/open-access/howopenisit/ ):
    • Full text, metadata, and citations of articles can be crawled and accessed with permission (Machine Readability Level 4)
    • Provides free readership rights to all articles immediately upon publication (Reader Rights Level 1)
    • Reuse is subject to certain restrictions; no remixing (Reuse Rights Level 3)
    • Allow authors to retain copyright in their article with no restrictions (Copyrights Level 1)
    • Author can post the final, peer-reviewed manuscript version (postprint) to any repository or website (Author Posting Rights Level 2)

You may review the complete list of criteria here.

Future submissions for inclusion in to DOAJ must include the complete set of information provided by the publisher. This information will be publicly available in the Directory. The journals currently listed in the DOAJ will have to go through a re-evaluation process based on the new criteria. This work will take place over the next 12 months or so.

Coventry University Extends Library Services with Ex Libris Alma

Ex Libris Group®, a world leader in the provision of library automation solutions, is pleased to announce that Coventry University has selected the next-generation Alma solution from Ex Libris. Following its 2010 decision to implement Primo to improve the user experience, the university has now taken a strategic step to improve library operations with Alma. Alma will replace the Aleph® integrated library system and the SFX® OpenURL link resolver, enabling the library to increase efficiency by employing a single, cloud-based solution to manage its electronic and print resources. The combination of Alma and Primo will enable Coventry University to streamline workflows while continuing to offer their users access to the wealth of its resources via a single interface.
“Our decision to adopt Alma follows both an in-depth review of the marketplace and observations of successful implementations in the UK, Europe, and worldwide,” stated Caroline Rock, university librarian at Coventry University. “We are confident that Alma will provide the unified functionality appropriate for today’s library users as well as for efficient and effective management of our information resources. Alma will enable our library to contribute fully to the academic goals of the university. Additionally, with this implementation, we will be able to build on the Ex Libris solutions that have provided us with strong foundations in both information resource management and resource discovery.”
Christoph Frech, regional sales director for Ex Libris Europe, commented, “By joining the growing number of institutions implementing Alma, Coventry University reaffirms Alma’s place as an established service in the market. Alma is a natural step forward for institutions currently using Ex Libris solutions and for all libraries looking for a next-generation, cloud‑based solution. The university’s decision to adopt this solution clearly demonstrates that Alma presents a sustainable alternative to locally installed library software.”

Yale University Chooses Summon Discovery Service

Yale University selected the Summon discovery service from Serials Solutions®, a ProQuest® business, to improve access to its distinctive collection, including 15 million volumes and information in all media. Yale University Library, the most recent of six Ivy League schools to adopt the Summon service, determined ease of customization, integrity of search results, a unified index architecture and the company’s track record for rapid innovation of new discovery features were essential in choosing to work with Serials Solutions.

The library conducted a thorough review of discovery services to identify a solution that would deliver improved discovery, has comprehensive coverage of its vast collection, increase usage of the library’s resources, and provide flexible and robust customization capabilities.

“As one of the world’s leading research libraries, providing easy access to our vast collection of resources is very important,” said Michael Dula, chief technology officer, Yale University Library. “The Summon API will enable us to create a more tailored user experience, customized interface, and connect our users to relevant content. While we carefully evaluated a number of services, Summon was the most obvious choice based on the ease-of-use and flexibility of the API, and the new features in Summon 2.0.”

Inherent to the service, the Summon API is used by dozens of libraries in creative and innovative ways. Customization trends among libraries reveal a range of uses with the Summon API – from custom interfaces to integration with open source interfaces to custom landing pages.

“We recognize the importance of providing libraries and librarians the opportunity to directly impact the discovery experience,” said John Law, vice president, discovery services, Serials Solutions. “In response to ever-changing user behaviors and the desire by libraries to provide more services that deliver greater value to researchers, the Summon service combines comprehensiveness with the flexibility to customize the user interface, and innovative features that allow libraries to offer layers of contextual guidance for users at the point they need it most.”

Used by more than 600 libraries in more than 40 countries, the Summon service is the first and only discovery service based on a unified index of content, leveraging its unique “match and merge” technology to combine rich metadata and full text from multiple sources to ultimately make items more discoverable. In just three years, the Summon unified index has grown from 200 million items to more than one billion items – with the vast majority of article and book content full-text searchable. Proven to increase usage of library resources, the Summon service consistently meets user expectations by delivering innovative new features for enhancing discovery.

SPARC Open Access Meeting 2014 to Focus on Convergence

The next SPARC Open Access Meeting, themed “Convergence,” will convene March 3–4, 2014, in Kansas City. The past year has seen growing momentum in the areas of open access, open data, and open educational resources. As the push for greater openness continues, these three fronts are converging in interesting and potentially transformative ways. Join us as leaders from the library community, academia, industry, student community, and other research avenues discuss how open access, open data, and open educational resources are intersecting, and the impact this convergence might have on research and discovery. The meeting is designed to emphasize collaborative actions that stakeholders can take to positively impact publishing, policy, digital repositories, author rights, and licensing.

Hotel reservations are now open. For room rates and more information, visit the SPARC Open Access Meeting 2014 webpage. Meeting registration will open in the fall of 2013.

Janet Lees to retire as OCLC EMEA Community Liaison

Janet Lees, OCLC Europe, the Middle East and Africa Community Liaison, has announced plans to retire after 31 years with the worldwide library cooperative.

Ms. Lees was among the first OCLC employees to be based outside the United States. She helped establish the OCLC office in Birmingham, England, joining the organization in January 1982. She was instrumental in making OCLC relevant in Europe, the Middle East and Africa.

Ms. Lees developed mutually beneficial relationships with libraries, cooperatives and other institutions across Europe and into the Middle East and Africa. She helped create longstanding relationships between OCLC and a number of distributors, including DBC (Denmark), DOC6 (Spain), IFnet (Italy), ITS (Eastern Europe) and particularly SABINET in South Africa, which helped bring many national groups of libraries into WorldCat and OCLC membership.

Ms. Lees served as Managing Director of OCLC EMEA from 1996 until 2002. After OCLC completed its merger with PICA that year, she was named Director of Sales for the combined operation. She served in that position until becoming Community Liaison for EMEA in January 2005.

“Janet Lees is widely respected in the library community for the depth and breadth of her knowledge and experience, as well as her generosity in sharing that knowledge,” said Jay Jordan, OCLC President and CEO. “She played a major role in creating and supporting the OCLC regional council structure that was introduced in 2008. She has worked tirelessly to inspire a commitment to membership in EMEA libraries, and has seen participation in the OCLC cooperative and in regional elections grow substantially over the years. We are grateful to Janet for her outstanding, dedicated service to OCLC and libraries worldwide.”

During her tenure, Ms. Lees has attended 19 IFLA conferences and visited 45 countries on behalf of OCLC.

EBSCO and Al Manhal in deal to add Arabic content to EBSCO Discovery Service

Collections from Al Manhal, the largest provider of electronic resources in the Arab world, will be searchable via EBSCO Information Service’s (EBSCO) robust and comprehensive discovery service, EBSCO Discovery Service(EDS). The agreement between EBSCO and Al Manhal will allow metadata for their eBook, eJournals, eReports and eDissertation collections to be added to EDS.

Al Manhal’s eBook Collection includes an exclusive collection of Arabic books available in 10 main subject areas: political science & international relations, business & economics, social sciences, law, language & literature, history, geography & biography, Islamic jurisprudence, Islam & other disciplines, specialized Islamic sciences and educational sciences.

The eJournal database from Al Manhal will also be added to the comprehensive collection of content in EDSand provide users with the most influential journals from leading universities, research institutes and scientific societies in the Arab world. The eJournal content covers humanities and social sciences as well as topics in the science, technical and medical fields. Al Manhal eReports databases include daily aggregated news of the latest regional issues in addition to more in-depth analyses of political, economic and security events in the region, delivered weekly and monthly. eDisserations are written by Arabic students and go through an evaluation process by leading experts before they are published.

Al Manhal is part of a growing list of publishers and other content partners that are taking part in EDS to bring more visibility to their content. Partners include the world’s largest scholarly journal & book publishers including Elsevier, Wiley Blackwell, Springer Science & Business Media, Taylor & Francis Informa, Sage Publications, Nature Publishing, IEEE, ACM and thousands of others. Partners also include content providers, such as LexisNexis, Thomson Reuters (Web of Science), JSTOR, ARTstor, Credo Reference, Encyclopedia Britannica, World Book, ABC-CLIO, The HathiTrust and many others.

EBSCO Discovery Service creates a unified, customized index of an institution’s information resources, and an easy, yet powerful means ofaccessing all of that content from a single search box—searching made even more powerful because of the quality of metadata and depth and breadth of coverage.

EBSCO Discovery Service is quickly becoming the discovery selection for many libraries (www.ebscohost.com/discovery/eds-news), and an obvious partner for content providers. Because the service builds on the foundation provided by the EBSCOhost® platform, libraries gain a full user experience for discovering their collections/OPAC—which is not typical in the discovery space. Further still, in the many universities and other libraries where EBSCOhost is the most-used platform for premium research, users are not asked to change their pathways or habits for searching. There’s simply more to discover on the familiar EBSCOhostplatform, and the same can be said for library administrators who can leverage their previous work with EBSCOadmin.

BJS Celebrates 100th Anniversary

BJS (British Journal of Surgery), the premier surgical journal in Europe and one of the top surgical periodicals in the world, published by Wiley, is marking its 100th anniversary with a number of special activities.

As part of the commemorative events, a series of twelve leading articles, “The Centenary Collection”, will be published throughout the year. In the first of these special articles, “Surgical History,” Harold Ellis, Professor at King’s College London School of Medicine, looks back at volume one of BJS. Others reflect on leading surgical advances over the century, and some look to the future direction of surgery, with topics such as surgical collaboration by W.S.M. Summerskill and R. Horton of The Lancet.

BJS has changed beyond recognition in 100 years and continues to evolve,” said J.J. Earnshaw, Joint Editor-in-Chief, BJS. “However, its ethos of high standards, surgical research, and training has been maintained through the century to the present day. BJS has and will continue to promote all that is best in contemporary surgery.”

The anniversary celebration is also being marked by a special event: “The Science of Surgery: A BJS Centenary Symposium” will be hosted on Saturday 22nd June 2013 at the University of Oxford. Notable speakers include the Joint Editor-in-Chief of the Journal, Professor Derek Alderson, and academics such as Sir Muir Gray and Geoff Bilder. Topics include surgical research, surgical innovation, the introduction of new technologies, and the future of surgical journals. The proceedings of the symposium will be recorded and available on www.bjs.co.uk.

Looking forward, the website and electronic media will be placed at the forefront of the new BJS. “BJS is a journal of the future that will be a complete learning resource for the surgeon at all career levels, rather than solely a scientific journal,” said Earnshaw.

Soon surgeons will be able to personalize their use of the BJS website, select their specialist interest, and receive relevant content automatically. BJS is also looking to advance the popular Clinical Media Library (CML) with rich images, videos, podcasts, and all forms of digital content.

As an additional part of the centenary celebrations, BJS has made the first issue from 1913 available for free. This issue provides fascinating insight into historical Instructive Mistakes, Rare or Obscure Cases, New Instruments and Appliances, and an Obituary of Lord Joseph Lister. To access the issue, please visit: http://onlinelibrary.wiley.com/doi/10.1002/bjs.v1:1/issuetoc.

SwetsWise Online Content upgrade goes live

Swets refines access management workflows for libraries and researchers with SwetsWise Online Content upgrade.
Swets announced today that it has released  the latest update to its SwetsWise platform; installing a revitalized end-user environment for users of the SwetsWise Online Content module. The update has been made freely available for all existing SwetsWise Online Content subscribers and is available for use immediately.

Swets’ aim with the product has always been to provide a single point of access to all of a library’s electronic resources and enable direct linking to all full-text, online articles. The latest upgrade introduces more content, improved search functionality and a totally revitalized end-user interface, making search and discovery much more intuitive and hassle free for the user.
With the new SwetsWise Online Content users will find:

  • A brand new interface built around intuitive, unified search functionality
  • More content and improved accessibility than ever before
  • 42 million searchable references, more than 14,500 full text titles from over 5,700 publishers
  • Handy filters to refine search queries for deeper, more precise investigation opportunities
  • Search and Publication alerts for favored titles and more

“One of the main focuses for librarians is to support and simplify the workflows of their researchers, students and patrons. Tailoring a collection of content to suit the demanding needs of users is important but ensuring the availability, discoverability and accessibility of that content is vital to the success of the work undertaken across their institution,” said David Main, CEO at Swets. “Access Management is one of the main pillars of our extensive range of content management services for libraries. The features installed with this free update will make it easier for our customers to streamline user  workflows, stimulate usage across their institution and unlock the potential value of all their electronic resources.”

The administrator tools included in SwetsWise Online Content have received minimal alterations, ensuring library administrators can continue with their existing workflows without disruption. Full specifications of the latest release, along with a collection of helpful user documents can be found at:
www.swets.com/swetswise/online-content-titlebank

View a quick tutorial of the interface and its main features at:
www.swets.com/video/swetswise-end-user-interface-tutorial

PeerJ passes one year anniversary

Today (June 12th, 2013) PeerJ celebrated the one year anniversary of their original announcement. PeerJ was announced on June 12th 2012 and opened for PeerJ for submissions on December 3rd. The first PeerJ articles were published on Feb 12th 2013, and PeerJ PrePrints launched on April 3rd 2013.

Over the last 12 months, the company has recruited an Editorial Board of 800 world renowned researchers; built cutting edge submission, peer-review, publication and pre-print software from scratch; and established themselves with all the major organizations who archive, index, list and certify new publications (for example, PeerJ is a full member of CrossRef, OASPA (the Open Access Scholarly Publishers Association) and COPE (the Committee on Publication Ethics). Their content is formally archived by CLOCKSS, LOCKSS and PubMed Central. They are indexed in PubMed, PubMed Central, Scopus, Google Scholar and the DOAJ).

Read more at this blog post:  http://blog.peerj.com/post/52783384704/celebrating-the-one-year-anniversary-of-peerj

OCLC completes major technical upgrade of core WorldCat infrastructure

OCLC completed the development work to convert the underlying structure for its WorldCatdatabase to Apache HBase, a distributed platform in use by many global information providers, including Facebook, Adobe and Salesforce.com. This marks the conclusion of a significant technical update to the WorldCat database of more than 300 million library records and more than 2 billion library holdings that will offer new options for data analysis and faster service to libraries and their users.

The Apache Hadoop software collection is a framework that allows for the distributed processing of large data sets across clusters of computers. HBase is a top-level Apache Software Foundation project built on Hadoop that provides major data handling improvements for these very large datasets. OCLC WorldShare applications for library management, resource sharing, metadata and discovery rely on access to a variety of large and growing datasets, including the WorldCat database.

“This is a very exciting technology transition and service upgrade,” said Greg Zick, OCLC’s Vice President of Global Engineering. “As we move our OCLC services to the cloud on the WorldShare platform, we need to find ways to optimize performance of our operations on large datasets like local and national catalogs and authority datasets. This upgrade will also help ongoing quality improvement efforts, record matching and merging and will enable new representations and uses of the cooperative’s data.”

The sheer scope of OCLC members’ cooperative data is one driver of this change, as HBase provides better handling of very large datasets. In addition, HBase and Hadoop allow OCLC to represent library information in new ways for use in e-content and linked data systems while providing more consistent, reliable and faster service to libraries and their users.

Ron Buckley, Senior OCLC Technology Manager and leader of the Hadoop migration team, will be discussing this effort with leaders in the database management field at the 2013 HBaseCon conference in San Francisco on June 13, 2013.

“Our results have been significant,” said Mr. Buckley. “Our hardware storage requirements have been considerably reduced, and our overall footprint simplified to support growth. We have seen large gains in performance for some major data operations where execution time has been slashed from days to hours. This upgrade lets us explore new areas such as detailed analytics and enriched relationships that will increase the value of the cooperative’s data for all libraries.”

Hadoop provides these enhancements, in part, by scaling data services across hundreds or even thousands of computers, each with several processor cores. This efficiently distributes large amounts of work across a set of machines, allowing for greater flexibility, speed and dependability. OCLC is running Hadoop across more than 150 servers in three clusters.

Michael Stack, Software Engineer at Cloudera, Chair of the Apache HBase Project Management Committee and keynote for the HBaseCon event, is enthusiastic about OCLC’s work in this area. “I have had multiple discussions with Ron Buckley and know that after careful study and much preparatory work, OCLC has pulled off a smooth transition,” Mr. Stack commented. “This is my favorite HBase deploy. It is about libraries, my favorite institution, and it is about Apache HBase as an enabling technology that allows OCLC to do more. It is a great story.”

This technology has already had an impact on OCLC functionality and services. The recent addition of linked data elements to WorldCat.org relies on the features available in Hadoop. Also, the new WorldShare Metadata Collection Manager service takes advantage of the data handling benefits of its distributed infrastructure.

“We credit the success of this venture to our remarkable migration team,” noted Mr. Zick. “Because of their intelligent and hard work, this significant transition has had a minimal impact on our members’ use of existing OCLC services. The team was able to replicate the production version of WorldCat in HBase, write a completely new access layer, and then incrementally move existing products and services to the new infrastructure with minimal disruption.”

Wellcome Trust Sanger Institute unveils new initiative to promote sharing of genetic and clinical data

World’s health researchers join together to share and use ‘big data’

The Global Alliance addresses a need for improved approaches to bring together the ever increasing amount of genomic and clinical data. [EMBL – European Bioinformatics Institute]
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More than 60 leading health care, research and disease advocacy organisations from across the world are joining together to form an international alliance dedicated to enabling secure sharing of genomic and clinical data.

Each of these organisations has signed a ‘Letter of Intent’, pledging to work together to create a not-for-profit, inclusive, public-private, international, non-governmental organisation (modelled on the World Wide Web Consortium, W3C) that will develop a common framework.

The cost of genome sequencing has fallen one-million fold, and ever increasing numbers of people are making their genetic and clinical data available for research and clinical use. However, interpreting people’s genetic data requires a standardised biomedical evidence base that is larger than any one party alone can develop, and that adheres to the highest ethical and privacy standards.

 “In recent years, many groups around the world have recognised the need for improved approaches to bring together genomic and clinical data, and some have made progress addressing this,” said Professor Mike Stratton, Director of the Wellcome Trust Sanger Institute.”But in coming together, and studying the challenges, we recognised that something was missing: an international body that spans diseases and institutions, committed to furthering progress in an innovative and responsible fashion.”

In January 2013, 50 colleagues from eight different countries met to discuss the current challenges and opportunities in genomic research and medicine, and how they could work together to foster medical progress. They concluded that the greatest need was a common framework of international standards designed to enable and oversee the sharing of genomic and clinical data in an effective, responsible, and interpretable manner.

Following the circulation of a White Paper from the meeting, more than 60 organisations from North and South America, Europe, Asia and Africa have joined together to form a non-profit global alliance which will work to develop a common framework, that enables new research based on shared data while protecting participant autonomy and privacy.

“At present, it is generally not possible to predict which changes in DNA sequence lead to clinical consequences. Only by comparing each personal genome sequence to a large repository of other such data can robust patterns and relationships can be identified,” said Dr Tom Hudson, Chairman of the Executive Committee of the International Cancer Genome Consortium, and President of the Ontario Institute for Cancer Research in Canada. “The stakes are high, because if we get it right we can create new opportunities to define diagnostic categories, streamline clinical trials, and match patients to therapy.

We want to make sure this is done in a global manner, and with the highest standards for ethics and privacy.”